Workshop on Whole Exome Seq Data Analysis

Event Details

Workshop on Whole Exome Seq Data Analysis

Time: July 21, 2017 at 6pm to August 19, 2017 at 7pm
Location: Institute of Agri-Biotechnology, University of Agricultural Sciences, Dharwad
Street: IABT, Conference Hall
City/Town: Dharwad
Website or Map: http://sites.google.com/view/…
Phone: 9844158444
Event Type: workshop
Organized By: Prashantha
Latest Activity: Jul 21

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Event Description

Workshop on Whole Exome Sequence Data Analysis

Duration: 3 Days

Timings: 9:30 am – 5:30 pm

Venue: 2nd Floor, Conference Hall, IABT, University of Agricultural Sciences, Dharwad-580005

Who should attend? M.B.B.S./M.Sc/M.Tech/M.D./Ph.D. students, faculty members, biomedical scientists, agricultural, veterinary scientists, clinicians from any branch of life sciences or a relevant field. Maximum no. of participants for the workshop will be restricted to 20. Candidate selection will be based on first come first serve basis. 

Course Objectives

After this workshop participants should:

  • More familiar with the tools and means to construct workflows/pipelines for WES data analysis
  • To understand the file formats produced at each stage of the bioinformatics pipeline (BAM, fastq, vcf).
  • To gain practical skills in applying standard bioinformatics tools, such as alignment to a reference sequence, variant calling and annotation.
  • To identify genes associated with a phenotype to design a gene panel which can be applied to whole exome data.
  • Gain experience in analysis and interpretation of NGS variants
  • Understand the quality control of sequencing data.
  • ·

Course Syllabus

- Introduction to NGS analysis methods

- Introduction to R and UNIX

- Raw Data Selection (NGS Data selection, principles, type of data, file formats)

- Quality analysis of raw data

- Pre-processing of raw data (Trim adaptors & Contaminants, Filter by quality scores, filter duplicate reads)

- Mapping reads onto a reference genome

- Targeted sequencing quality control

- Quality control of mapped reads

- Post alignment processing

- Variant calling

- Effect annotation of the found variants

- Variant prioritization in Variant Explorer

Registration Fees

Rs: 4500 (Four thousand five hundred only) pay by cash/ direct deposit to our account

Ac.No: 104001011005868

Name of Ac Holder: Prashantha C N

Bank Name: Vijaya Bank

IFSC Code: VIJB0001040

Branch: Byatarayanapura, Bangalore-560092

 

For Registration

Call/ SMS / Whatsapp to +91-9844158444 Or Email with Name, Phone number, Email address, University/College/Institution, Address, Field of study, References to clovergenls@gmail.com web link www.clovergen.com

 

Registration Open: 01 July, 2017

Last date for Registration: 10 August, 2017

Systems Required: Linux Installed Laptop with minimum 4 GB RAM and 500GB Hard disk is required.

Accommodation: Accommodation facility available to the students, please confirm your accommodation

 

Clovergen Life Sciences Pvt Ltd

Bangalore Address: #165, 4th Main, 2nd B Cross, Talakavery Layout, Amruthahalli, Bangalore-560092, Tel.No: +91-80-41550847, Mobile: +91-9844158444

Dharwad Address: Lab No: 3, KBITS Incubation Center, IABT, University of Agricultural Sciences, Dharwad-580005, Tel.No: +91-836-2449444 Email. Id: clovergenls@gmail.com.

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